General Foundational Protocol for Chronic Digestive Disease

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Protocols Brand Protocols AOR
General Foundational Protocol for Chronic Digestive Disease

This protocol was developed for practitioners using Fullscript in Canada and the templates cannot be applied to accounts operating outside of Canada.


The Fullscript Integrative Medical Advisory team has developed or collected these protocols from practitioners and supplier partners to help health care practitioners make decisions when building treatment plans. By adding this protocol to your Fullscript template library, you understand and accept that the recommendations in the protocol are for initial guidance and may not be appropriate for every patient.

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General Foundational Protocol for Chronic Digestive Disease

Total Protocol Duration: 12 weeks

Magnesium Synergy

1 to 2 scoops, twice per daily with or without food (mixes well with lemon water in the morning), week 1 to 4

Description: Balances pH, supports phase II detoxification (methylation, sulfation), enhances cellular and mitochondrial function.

Advanced B Complex or Pro B-Complex 

1 to 3 capsules, once per day with food, week 2 to 4


  • Any chronic digestive complaint increases the need for cellular regeneration and thus methylation processes. Methylation is also involved in detoxification, immunity, hormone balance and mood.
  • Complete combination of highly bioavailable and active forms of B vitamins for cellular energy production, reduction of homocysteine and hormone balance.

Methylcobalamin or Pro Methylcobalamin

1 lozenge, once per day, week 3 to 4

Description: High dose of the active form of B12 to promote production of SAMe, increase energy and nerve regeneration.

Caution: Use of methylcobalamin in those with anxiety and slow COMT activity may increase catecholamine conversion and epinephrine concentrations. Consider hydroxycobalamin, or Tri-B12 Synergy, which contains adenosylcobalamin and hydroxycobalamin.


1 capsule, three times per day with food, week 5 to 12

Description: Studied combination of probiotics that promote butyrate production, bifidobacterium growth and reduce intestinal pH.

Ortho Core

2 capsules, three times per day with food, week 1 to 12

Description: High potency multivitamin in active forms. Also contains a potent antioxidant combination for comprehensive daily protection.



AOR Professional not available in retail health-food stores or online to the general public.